makeVariantNames: Create interpretable splice variant names

Description Usage Arguments Value Author(s) Examples

View source: R/graphs.R

Description

Create interpretable splice variant names taking format GENE_EVENT_VARIANT/ORDER_TYPE. GENE is based on geneName if available, and geneID otherwise. EVENT and VARIANT enumerate events and variants for the same gene and event, respectively. ORDER indicates the total number of variants in the same event (e.g. 1/2 refers to the first out of two splice variants in the event). TYPE is based on variantType.

Usage

1
makeVariantNames(variants)

Arguments

variants

SGVariants object

Value

Character vector with splice variant names

Author(s)

Leonard Goldstein

Examples

1

ldg21/SGSeq documentation built on May 7, 2019, 9:37 a.m.