makeVariantNames: Create interpretable splice variant names
In ldg21/SGSeq: Splice event prediction and quantification from RNA-seq data

Description Usage Arguments Value Author(s) Examples

Create interpretable splice variant names taking format GENE_EVENT_VARIANT/ORDER_TYPE. GENE is based on geneName if available, and geneID otherwise. EVENT and VARIANT enumerate events and variants for the same gene and event, respectively. ORDER indicates the total number of variants in the same event (e.g. 1/2 refers to the first out of two splice variants in the event). TYPE is based on variantType.