predictCandidatesInternal: Identify candidate internal exons

Description Usage Arguments Value Author(s)

View source: R/features-prediction.R

Description

Identify candidate internal exons based on previously identified splice sites and regions with sufficient read coverage.

Usage

1
predictCandidatesInternal(islands, splicesites, frag_coverage, relCov)

Arguments

islands

IRanges of genomic regions with minimal read coverage required for internal exon prediction

splicesites

IRanges of splice sites with metadata columns “type” and “N”

frag_coverage

Rle object with fragment coverage

relCov

Minimum relative coverage required for exon prediction

Value

IRanges of candidate internal exons

Author(s)

Leonard Goldstein


ldg21/SGSeq documentation built on May 7, 2019, 9:37 a.m.