junctionCompatible: Compatible fragment counts for splice junctions

Description Usage Arguments Value Author(s)

View source: R/overlaps.R

Description

Identify fragments compatible with splice junctions.

Usage

1
2
junctionCompatible(junctions, frag_exonic, frag_intron, min_anchor,
  counts = TRUE)

Arguments

junctions

IRanges of splice junctions

frag_exonic

IRangesList of exonic regions, one entry per fragment

frag_intron

IRangesList of introns, one entry per fragment

min_anchor

Integer specifying minimum anchor length

counts

Logical indicating whether counts or indices of compatible fragments should be returned

Value

Counts or list of indices of compatible fragments

Author(s)

Leonard Goldstein


ldg21/SGSeq documentation built on May 7, 2019, 9:37 a.m.