predictCandidatesTerminal: Identify candidate terminal exons

In ldg21/SGSeq: Splice event prediction and quantification from RNA-seq data

Description

Identify candidate terminal exons based on previously identified splice sites and regions with sufficient read coverage.

Usage

predictCandidatesTerminal(islands, splicesites, type = c("exon_L", "exon_R"))

Arguments

islands	IRanges of genomic regions with minimal read coverage required for internal exon prediction
splicesites	IRanges of splice sites with metadata columns “type” and “N”
type	Character string indicating whether terminal exons should be identified to the left (“exon_L”) or right (“exon_R”) of provided splice sites

Value

IRanges of candidate terminal exons

Author(s)

Leonard Goldstein

ldg21/SGSeq documentation built on Oct. 14, 2020, 9:51 p.m.