SGVariantCounts: Splice graph variant counts

Description Usage Arguments Value Author(s) Examples

View source: R/classes.R

Description

Creates an instance of S4 class SGVariantCounts for storing splice variant counts.

Usage

1

Arguments

x

RangedSummarizedExperiment with SGVariants as rowRanges and assays “variantFreq”, “countsVariant5p”, “countsVariant3p”, “countsEvent5p”, “countsEvent3p”, and optionally “countsVariant5pOr3p”

Value

SGVariantCounts object

Author(s)

Leonard Goldstein

Examples

1
sgvc <- SGVariantCounts()

ldg21/SGSeq documentation built on May 7, 2019, 9:37 a.m.