derfinder-package: Differential expression analysis of RNA-seq data at base-pair...
In leekgroup/derfinder: Differential expression analysis of RNA-seq data at base-pair resolution
Description
Details
Author(s)
References
Description
Differential expression analysis of per-nucleotide coverage
tables.
Details
Package: derfinder
Type:
Package
Version: 1.0.2
Date: 2013-04-04
License: What license is it under?
Creates SQLite
database of per-nucleotide coverage files (makeDb),
fits linear model to each nucleotide to determine
differential expression
(getLimmaInput,getTstats), fits Hidden Markov
Model using moderated t statistics from linear models as
state emissions to get a list of differentially expressed
regions (getRegions), connects found regions with
known annotation (getAnnotation, plotRegion,
plotExon, plotGene).
Author(s)
Alyssa Frazee <afrazee@jhsph.edu>
References
Paper coming soon.
leekgroup/derfinder documentation built on May 20, 2019, 11:30 p.m.
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Description Details Author(s) References
Description
Differential expression analysis of per-nucleotide coverage tables.
Details
| Package: | derfinder |
| Type: | Package |
| Version: | 1.0.2 |
| Date: | 2013-04-04 |
| License: | What license is it under? |
Creates SQLite
database of per-nucleotide coverage files (makeDb),
fits linear model to each nucleotide to determine
differential expression
(getLimmaInput,getTstats), fits Hidden Markov
Model using moderated t statistics from linear models as
state emissions to get a list of differentially expressed
regions (getRegions), connects found regions with
known annotation (getAnnotation, plotRegion,
plotExon, plotGene).
Author(s)
Alyssa Frazee <afrazee@jhsph.edu>
References
Paper coming soon.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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