Description Usage Arguments Value Author(s) See Also
Connects results of tornado pipeline to existing annotation as a way to determine which regions may point to interesting biological events.
1 | getFlags(regions, exons, chromosome, pctcut = 0.8)
|
regions |
data frame of regions to consider, usually
the |
exons |
data frame containing annotated exons you
would like to consider. Should have columns
|
chromosome |
Chromosome you're considering. Currently you can only do one chromosome at a time. |
pctcut |
What percentage of an exon should a region overlap in order to call that exon differentially expressed? Default 0.8 (meaning 80%). |
List with elements having length equal to the number of
rows in regions
:
flags |
Event indicated by corresponding region |
flag.info |
Genomic features (exons) associated with genomic events |
percent.exon |
The percent of the exon (in flag.info) overlapped by this region |
Alyssa Frazee
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