Files in leekgroup/derfinder
Differential expression analysis of RNA-seq data at base-pair resolution

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/derfinder-package.R R/find.mean.R R/find.mean.down.R R/find.mean.up.R R/find.sd.R R/findclosest.ahead.R R/findclosest.behind.R R/get.numalts.R R/get.pvals.DF.R R/get.pvals.R R/getAnnotation.R R/getColmeds.R R/getExons.R R/getF.R R/getFlags.R R/getLimmaInput.DF.R R/getLimmaInput.R R/getParams.R R/getParams.failsafe.R R/getRegions.R R/getSvs.R R/getTstats.R R/gsubfn.R R/last.R R/locfdrFit.R R/makeDF.R R/makeDb.R R/match.funfn.R R/mergeRegions.R R/ostrapply.R R/plotExon.R R/plotGene.R R/plotRegion.R R/read.csv.sql.R R/sqldf.R R/strapply.R R/supportedTables.R README.md analysis_code.R
countReads.py
data/metadata.txt
data/orbFrontalF11_Y.bam
data/orbFrontalF1_Y.bam
data/orbFrontalF23_Y.bam
data/orbFrontalF2_Y.bam
data/orbFrontalF32_Y.bam
data/orbFrontalF33_Y.bam
data/orbFrontalF3_Y.bam
data/orbFrontalF40_Y.bam
data/orbFrontalF42_Y.bam
data/orbFrontalF43_Y.bam
data/orbFrontalF47_Y.bam
data/orbFrontalF53_Y.bam
data/orbFrontalF55_Y.bam
data/orbFrontalF56_Y.bam
data/orbFrontalF58_Y.bam
inst/doc/vignette.pdf
inst/extdata/allcounts.txt
man/derfinder-package.Rd man/find.mean.Rd man/find.mean.down.Rd man/find.mean.up.Rd man/find.sd.Rd man/findclosest.ahead.Rd man/findclosest.behind.Rd man/get.numalts.Rd man/get.pvals.DF.Rd man/get.pvals.Rd man/getAnnotation.Rd man/getColmeds.Rd man/getExons.Rd man/getF.Rd man/getFlags.Rd man/getLimmaInput.DF.Rd man/getLimmaInput.Rd man/getParams.Rd man/getParams.failsafe.Rd man/getRegions.Rd man/getSvs.Rd man/getTstats.Rd man/gsubfn.Rd man/last.Rd man/locfdrFit.Rd man/makeDF.Rd man/makeDb.Rd man/match.funfn.Rd man/mergeRegions.Rd man/ostrapply.Rd man/plotExon.Rd man/plotGene.Rd man/plotRegion.Rd man/read.csv.sql.Rd man/sqldf.Rd man/strapply.Rd man/supportedTables.Rd
sample10.par
tx.null.cuff-UPDATED.rda
tx.sex.cuff-UPDATED.rda
leekgroup/derfinder documentation built on May 21, 2017, 10:36 a.m.