Files in leekgroup/derfinder
Differential expression analysis of RNA-seq data at base-pair resolution
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/derfinder-package.R
R/find.mean.R
R/find.mean.down.R
R/find.mean.up.R
R/find.sd.R
R/findclosest.ahead.R
R/findclosest.behind.R
R/get.numalts.R
R/get.pvals.DF.R
R/get.pvals.R
R/getAnnotation.R
R/getColmeds.R
R/getExons.R
R/getF.R
R/getFlags.R
R/getLimmaInput.DF.R
R/getLimmaInput.R
R/getParams.R
R/getParams.failsafe.R
R/getRegions.R
R/getSvs.R
R/getTstats.R
R/gsubfn.R
R/last.R
R/locfdrFit.R
R/makeDF.R
R/makeDb.R
R/match.funfn.R
R/mergeRegions.R
R/ostrapply.R
R/plotExon.R
R/plotGene.R
R/plotRegion.R
R/read.csv.sql.R
R/sqldf.R
R/strapply.R
R/supportedTables.R
README.md
analysis_code.R
countReads.py
data/metadata.txt
data/orbFrontalF11_Y.bam
data/orbFrontalF1_Y.bam
data/orbFrontalF23_Y.bam
data/orbFrontalF2_Y.bam
data/orbFrontalF32_Y.bam
data/orbFrontalF33_Y.bam
data/orbFrontalF3_Y.bam
data/orbFrontalF40_Y.bam
data/orbFrontalF42_Y.bam
data/orbFrontalF43_Y.bam
data/orbFrontalF47_Y.bam
data/orbFrontalF53_Y.bam
data/orbFrontalF55_Y.bam
data/orbFrontalF56_Y.bam
data/orbFrontalF58_Y.bam
inst/doc/vignette.pdf
inst/extdata/allcounts.txt
man/derfinder-package.Rd
man/find.mean.Rd
man/find.mean.down.Rd
man/find.mean.up.Rd
man/find.sd.Rd
man/findclosest.ahead.Rd
man/findclosest.behind.Rd
man/get.numalts.Rd
man/get.pvals.DF.Rd
man/get.pvals.Rd
man/getAnnotation.Rd
man/getColmeds.Rd
man/getExons.Rd
man/getF.Rd
man/getFlags.Rd
man/getLimmaInput.DF.Rd
man/getLimmaInput.Rd
man/getParams.Rd
man/getParams.failsafe.Rd
man/getRegions.Rd
man/getSvs.Rd
man/getTstats.Rd
man/gsubfn.Rd
man/last.Rd
man/locfdrFit.Rd
man/makeDF.Rd
man/makeDb.Rd
man/match.funfn.Rd
man/mergeRegions.Rd
man/ostrapply.Rd
man/plotExon.Rd
man/plotGene.Rd
man/plotRegion.Rd
man/read.csv.sql.Rd
man/sqldf.Rd
man/strapply.Rd
man/supportedTables.Rd
sample10.par
tx.null.cuff-UPDATED.rda
tx.sex.cuff-UPDATED.rda
