doubledeepms_protein_stability_plots: doubledeepms_protein_stability_plots

In lehner-lab/doubledeepms: Analysis scripts to reproduce the figures and results from doubleDeepPCA manuscript

doubledeepms_protein_stability_plots

Description

Plot free energy heatmaps.

Usage

doubledeepms_protein_stability_plots(input_list, pdb_file_list,
  pdb_chain_query_list, aaprop_file, aaprop_file_selected, input_MSA_list,
  outpath, colour_scheme, execute = TRUE)

Arguments

input_list	path to MoCHI thermo model fit results (required)
pdb_file_list	path to PDB file (required)
pdb_chain_query_list	query chain id (required)
aaprop_file	path to amino acid properties file (required)
aaprop_file_selected	path to file with selected subset of identifiers
input_MSA_list	path to MSA frequencies data (required)
outpath	output path for plots and saved objects (required)
colour_scheme	colour scheme file (required)
execute	whether or not to execute the analysis (default: TRUE)

Value

Nothing

lehner-lab/doubledeepms documentation built on July 21, 2023, 4:10 a.m.