Likefun: Likelihood Function of the NB-Beta Model

In lengning/EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

Description

'Likefun' specifies the Likelihood Function of the NB-Beta Model.

Usage

Likefun(ParamPool, InputPool)

Arguments

ParamPool	The parameters that will be estimated in EM.
InputPool	The control parameters that will not be estimated in EM.

Value

The function will return the log-likelihood.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

#x1 = c(.6,.7,.3)
#Input = matrix(rnorm(100,100,1), ncol=10)
#RIn = matrix(rnorm(100,200,1), ncol=10)
#InputPool = list(Input[,1:5], Input[,6:10], Input,
#	rep(.1,100), 1, RIn, RIn[,1:5], RIn[,6:10], 100) 
#Likefun(x1, InputPool)

lengning/EBSeq documentation built on May 21, 2019, 4:02 a.m.