QuantileNorm: Quantile Normalization
In lengning/EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
'QuantileNorm' gives the quantile normalization.
Usage
1
QuantileNorm(Data, Quantile)
Arguments
Data
The data matrix with transcripts in rows and lanes in columns.
Quantile
The quantile the user wishs to use. Should be a number between 0 and 1.
Details
Use a quantile point to normalize the data.
Value
The function will return a vector contains the normalization factor for each lane.
Author(s)
Ning Leng
References
Bullard, James H., et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC bioinformatics 11.1 (2010): 94.
See Also
MedianNorm
Examples
1
2
3
4
5
data(GeneMat)
Sizes = QuantileNorm(GeneMat,.75)
#EBOut = EBTest(Data = GeneMat,
# Conditions = as.factor(rep(c("C1","C2"), each=5)),
# sizeFactors = Sizes, maxround = 5)
lengning/EBSeq documentation built on May 21, 2019, 4:02 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
'QuantileNorm' gives the quantile normalization.
Usage
1 | QuantileNorm(Data, Quantile)
|
Arguments
Data |
The data matrix with transcripts in rows and lanes in columns. |
Quantile |
The quantile the user wishs to use. Should be a number between 0 and 1. |
Details
Use a quantile point to normalize the data.
Value
The function will return a vector contains the normalization factor for each lane.
Author(s)
Ning Leng
References
Bullard, James H., et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC bioinformatics 11.1 (2010): 94.
See Also
MedianNorm
Examples
1 2 3 4 5 | data(GeneMat)
Sizes = QuantileNorm(GeneMat,.75)
#EBOut = EBTest(Data = GeneMat,
# Conditions = as.factor(rep(c("C1","C2"), each=5)),
# sizeFactors = Sizes, maxround = 5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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