f1: The Prior Predictive Distribution of being DE

In lengning/EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

Description

'f1' gives the Prior Predictive Distribution of DE.

Usage

f1(Input1, Input2, AlphaIn, BetaIn, EmpiricalRSP1, 
	EmpiricalRSP2, NumOfGroup, log)

Arguments

Input1	Expressions from Condition1.
Input2	Expressions from Condition2.
AlphaIn, BetaIn, EmpiricalRSP1, EmpiricalRSP2	The parameters estimated from last iteration of EM.
NumOfGroup	How many transcripts within each Ng group.
log	If true, will give the log of the output.

Value

The function will return the prior predictive distribution values of being DE.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

f0

Examples

#f1(matrix(rnorm(100,100,1),ncol=10), 
#	matrix(rnorm(100,100,1),ncol=10), .5, .6, 
#	matrix(rnorm(100,200,1),ncol=10), 
#	matrix(rnorm(100,200,1),ncol=10), 100, TRUE)

lengning/EBSeq documentation built on May 21, 2019, 4:02 a.m.