GetPPMat: Posterior Probability of Transcripts

Description Usage Arguments Value Author(s) References Examples

View source: R/GetPPMat.R

Description

'GetPPMat' generates the Posterior Probability of being each pattern of each transcript based on the EBTest output.

Usage

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GetPPMat(EBout)

Arguments

EBout

The output of EBTest function.

Value

The poster probabilities of being EE (first column) and DE (second column).

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

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data(GeneMat)
GeneMat.small = GeneMat[c(500:550),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
	Conditions = as.factor(rep(c("C1","C2"), each=5)),
	sizeFactors = Sizes, maxround = 5)
PP = GetPPMat(EBOut)
str(PP)
head(PP)

lengning/EBSeq documentation built on May 21, 2019, 4:02 a.m.