RankNorm: Rank Normalization

In lengning/EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

Description

'RankNorm' gives the rank normalization.

Usage

RankNorm(Data)

Arguments

Data	The data matrix with transcripts in rows and lanes in columns.

Value

The function will return a matrix contains the normalization factor for each lane and each transcript.

Author(s)

Ning Leng

See Also

MedianNorm, QuantileNorm

Examples

data(GeneMat)
Sizes = RankNorm(GeneMat)
# Run EBSeq
# EBres = EBTest(Data = GeneData, NgVector = rep(1,10^4), 
#	Vect5End = rep(1,10^4), Vect3End = rep(1,10^4), 
#	Conditions = as.factor(rep(c(1,2), each=5)), 
#	sizeFactors = Sizes, maxround=5)

lengning/EBSeq documentation built on May 21, 2019, 4:02 a.m.