Files in leppott/BioMonTools
Tools for Biomonitoring and Bioassessment

.Rbuildignore

.github/.gitignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md .github/ISSUE_TEMPLATE/request_metric_index.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

BioMonTools.Rproj

DESCRIPTION

LICENSE

NAMESPACE

NEWS

NEWS.md NEWS.rmd R/MapTaxaObs.R R/assign_indexclass.R R/data.R R/markExcluded.R R/metric_scores.R R/metric_stats.R R/metric_stats2.R R/metric_values.R R/metric_values_excel.R R/qc_checks.R R/qc_taxa.R R/rarify.R R/runShiny.R R/taxa_translate.R README.Rmd README.md

_pkgdown.yml

data-raw/data/data_ELMR_MA_ALL.tsv

data-raw/data/data_IDEM_diatom_mmi_dev.tab

data-raw/data/data_IDEM_diatom_mmi_qc.tab

data-raw/data/data_benthos_PacNW.tsv

data-raw/data/data_bio2rarify_3col_600.tsv

data-raw/data/data_bio2rarify_500.tsv

data-raw/data/data_coral_bcg_metric_dev.tsv

data-raw/data/data_coral_bcg_metric_qc.tsv

data-raw/data/data_metval_SCMB_IBI.tsv

data-raw/data/data_mmi_dev.tsv

data-raw/data/data_taxa_bugs_genus_MBSS.tab

data-raw/data/data_taxa_fish_MBSS.tab

data-raw/figures/RBP2_waterdrop.png

data/TaxaMaster_Ben_BCG_PacNW.rda

data/data_Taxa_MA.rda

data/data_benthos_MBSS.rda

data/data_benthos_PacNW.rda

data/data_bio2rarify.rda

data/data_coral_bcg_metric_dev.rda

data/data_coral_bcg_metric_qc.rda

data/data_diatom_mmi_dev.rda

data/data_diatom_mmi_qc.rda

data/data_fish_MBSS.rda

data/data_metval_scmb_ibi.rda

data/data_mmi_dev.rda

doc/ExcludedTaxaDecisionCrit.pdf inst/extdata/BioMonTools_LibraryCreation.Rmd

inst/extdata/BioMonTools_LibraryCreation.nb.html

inst/extdata/Data_Benthos.xlsx

inst/extdata/FL_BCG_BioMonTools_Input_20240307.csv

inst/extdata/IndexClass.xlsx

inst/extdata/MetricFlags.xlsx

inst/extdata/MetricNames.xlsx

inst/extdata/MetricScoring.xlsx

inst/extdata/_Input_HiGradHiElev_noExclude_20220108_small.csv

inst/extdata/taxa_official/CHAR_Bugs.csv

inst/extdata/taxa_official/CHAR_Bugs_metadata.csv

inst/extdata/taxa_official/CHAR_Fish.csv

inst/extdata/taxa_official/CHAR_Fish_metadata.csv

inst/extdata/taxa_official/ORWA_ATTRIBUTES_20221212.csv

inst/extdata/taxa_official/ORWA_ATTRIBUTES_METADATA_20221117.csv

inst/extdata/taxa_official/ORWA_TAXATRANSLATOR_20221219.csv

inst/extdata/taxa_official/_pick_files.csv

inst/shiny-examples/BioMonTools/data/remove.txt

inst/shiny-examples/BioMonTools/external/Help.html

inst/shiny-examples/BioMonTools/external/RMD/Shiny_Pics.xlsx

inst/shiny-examples/BioMonTools/external/RMD/files/OutputFileSubtabs.xlsx

inst/shiny-examples/BioMonTools/external/RMD/images/FileBuilder_TaxaTrans_About_Fig1.jpg

inst/shiny-examples/BioMonTools/external/RMD/images/Shiny_MarkExcluded.png

inst/shiny-examples/BioMonTools/external/RMD/images/Shiny_Subsample.png

inst/shiny-examples/BioMonTools/external/RMD/images/Shiny_TaxaMap.png

inst/shiny-examples/BioMonTools/external/RMD/images/Shiny_TaxaTranslation.png

inst/shiny-examples/BioMonTools/results/remove.txt

inst/shiny-examples/BioMonTools/rsconnect/shinyapps.io/tetratech-wtr-wne/BioMonTools.dcf

inst/shiny-examples/BioMonTools/scripts/helper_functions.R inst/shiny-examples/BioMonTools/server.R inst/shiny-examples/BioMonTools/ui.R

inst/shiny-examples/BioMonTools/www/MetricNames.xlsx

inst/shiny-examples/BioMonTools/www/ShinyHTML_About.html

inst/shiny-examples/BioMonTools/www/ShinyHTML_CalcMetrics_algae.html

inst/shiny-examples/BioMonTools/www/ShinyHTML_CalcMetrics_bugs.html

inst/shiny-examples/BioMonTools/www/ShinyHTML_CalcMetrics_fish.html

inst/shiny-examples/BioMonTools/www/ShinyHTML_MarkExcluded.html

inst/shiny-examples/BioMonTools/www/ShinyHTML_Subsample.html

inst/shiny-examples/BioMonTools/www/ShinyHTML_TaxaMaps.html

inst/shiny-examples/BioMonTools/www/linked_files/About/BMT_ExampleRScripts.zip

inst/shiny-examples/BioMonTools/www/linked_files/CalcMetrics/BioMonTools_BugMetricInputFileReqs_v2_20220124.csv

inst/shiny-examples/BioMonTools/www/linked_files/CalcMetrics/BugMetricInput1.csv

inst/shiny-examples/BioMonTools/www/linked_files/MarkExcluded/BMT_MarkExcluded_Example1.R

inst/shiny-examples/BioMonTools/www/linked_files/MarkExcluded/MarkRedundant_DecisionCriteria.docx

inst/shiny-examples/BioMonTools/www/linked_files/MarkExcluded/MarkRedundant_ExampleFiles.zip

inst/shiny-examples/BioMonTools/www/linked_files/Subsample/BMT_subsample300.R

inst/shiny-examples/BioMonTools/www/linked_files/Subsample/Subsample_ExampleFiles.zip

inst/shiny-examples/BioMonTools/www/linked_files/TaxaMaps/BMT_MapTaxaObs_Example1.R

inst/shiny-examples/BioMonTools/www/linked_files/TaxaMaps/TaxaMaps_ExampleFiles_v2.zip

inst/shiny-examples/BioMonTools/www/linked_files/TaxaTrans/Test1_FileBuilder_TaxaTransAttr.csv

inst/shiny-examples/BioMonTools/www/linked_files/TaxaTrans/examples_all.zip

inst/shiny-examples/BioMonTools/www/rmd_html/ShinyHTML_FB_TaxaTrans_1About.html

inst/shiny-examples/BioMonTools/www/rmd_html/ShinyHTML_FB_TaxaTrans_2Output.html

man/MapTaxaObs.Rd man/assign_IndexClass.Rd man/data_Taxa_MA.Rd man/data_benthos_MBSS.Rd man/data_benthos_PacNW.Rd man/data_bio2rarify.Rd man/data_coral_bcg_metric_dev.Rd man/data_coral_bcg_metric_qc.Rd man/data_diatom_mmi_dev.Rd man/data_diatom_mmi_qc.Rd man/data_fish_MBSS.Rd man/data_mmi_dev.Rd

man/figures/logo.png

vignettes/.install_extras

vignettes/ExcludeTaxaDecisionCrit.pdf vignettes/vignette_BioMonTools.Rmd vignettes/vignette_MapTaxaObs.Rmd vignettes/vignette_NewIndex.Rmd

leppott/BioMonTools documentation built on March 1, 2025, 7:18 a.m.

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leppott/BioMonTools
Tools for Biomonitoring and Bioassessment

Files in leppott/BioMonTools
Tools for Biomonitoring and Bioassessment

R Package Documentation

Browse R Packages

We want your feedback!

leppott/BioMonTools Tools for Biomonitoring and Bioassessment

Files in leppott/BioMonTools Tools for Biomonitoring and Bioassessment

R Package Documentation

Browse R Packages

We want your feedback!

leppott/BioMonTools
Tools for Biomonitoring and Bioassessment

Files in leppott/BioMonTools
Tools for Biomonitoring and Bioassessment