camp: The fetal brain single-cell dataset.
In lingxuez/SOUP: Semi-soft Clustering of Single Cell Data
Description
Usage
Format
Source
Examples
Description
An RNA-seq dataset published in
Camp et al. (2015),
containing 220 fetal brain single cells.
Cells are grouped into 7 cell types,
and we retain the 12,694 genes that are expressed in at least 2 cells.
Usage
1
Format
A list with three items:
- cell.info
a dataframe with 220 rows and two columns, cell.id and cell.type.
- counts
a matrix of RNA-seq counts, with 220 rows and 12,694 columns.
- select.genes
names of the 430 genes being selected by DESCEND and SPCA.
Source
Camp et al. (2015)
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.
PNAS.
Examples
1
2
3
lingxuez/SOUP documentation built on May 28, 2019, 3:38 p.m.
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Description Usage Format Source Examples
Description
An RNA-seq dataset published in Camp et al. (2015), containing 220 fetal brain single cells. Cells are grouped into 7 cell types, and we retain the 12,694 genes that are expressed in at least 2 cells.
Usage
1 |
Format
A list with three items:
- cell.info
a dataframe with 220 rows and two columns, cell.id and cell.type.
- counts
a matrix of RNA-seq counts, with 220 rows and 12,694 columns.
- select.genes
names of the 430 genes being selected by DESCEND and SPCA.
Source
Camp et al. (2015) Human cerebral organoids recapitulate gene expression programs of fetal neocortex development. PNAS.
Examples
1 2 3 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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