getTimeline: Estimate developmental trajectory
In lingxuez/SOUP: Semi-soft Clustering of Single Cell Data
Description
Usage
Arguments
Value
Description
Estimate the developmental timeline for cells from SOUP soft membership.
Usage
1
getTimeline(membership, centers, k.start = NULL, k.end = NULL)
Arguments
membership
An n.cell-by-K soft membership matrix
centers
A K-by-n.gene cluster center matrix
k.start
Which cluster is the starting point?
One, and only one of k.start and k.end must be specified.
k.end
Which cluster is the ending point?
One, and only one of k.start and k.end must be specified.
Value
A vector of timepoints for all cells.
lingxuez/SOUP documentation built on May 28, 2019, 3:38 p.m.
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Description Usage Arguments Value
Description
Estimate the developmental timeline for cells from SOUP soft membership.
Usage
1 | getTimeline(membership, centers, k.start = NULL, k.end = NULL)
|
Arguments
membership |
An n.cell-by-K soft membership matrix |
centers |
A K-by-n.gene cluster center matrix |
k.start |
Which cluster is the starting point?
One, and only one of |
k.end |
Which cluster is the ending point?
One, and only one of |
Value
A vector of timepoints for all cells.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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