getDescendants: Get descendants in a tree
In lingxuez/SOUP: Semi-soft Clustering of Single Cell Data
Description
Usage
Arguments
Value
References
Description
Helper function to extract all descendants of 'clus' in a tree, one node per cluster.
This code is adapted from the R package 'slingshot'.
Usage
1
getDescendants(clus, forest, parent = NULL)
Arguments
forest
the adjacency matrix between clusters (nodes)
parent
the parent cluster (node) that will be excluded from the result
clust
the cluster (node) to start with
Value
A vector containing the list of descendants
References
Street K, Risso D, Fletcher RB, et al. (2017).
"Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics."
bioRxiv. 10.1101/128843
lingxuez/SOUP documentation built on May 28, 2019, 3:38 p.m.
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Description Usage Arguments Value References
Description
Helper function to extract all descendants of 'clus' in a tree, one node per cluster. This code is adapted from the R package 'slingshot'.
Usage
1 | getDescendants(clus, forest, parent = NULL)
|
Arguments
forest |
the adjacency matrix between clusters (nodes) |
parent |
the parent cluster (node) that will be excluded from the result |
clust |
the cluster (node) to start with |
Value
A vector containing the list of descendants
References
Street K, Risso D, Fletcher RB, et al. (2017). "Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics." bioRxiv. 10.1101/128843
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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