plotGeneTimeline: Plot gene expression along trajectory
In lingxuez/SOUP: Semi-soft Clustering of Single Cell Data
Description
Usage
Arguments
Value
Description
Plot gene expression along trajectory
Usage
1
2
3
plotGeneTimeline(expr, marker.gene, timeline,
x.title = "SOUP trajectory", y.title = "Expression", title = "",
font.size = 10)
Arguments
expr
The cell-by-gene expression matrix to be visualized
marker.gene
The gene to be visualized; must be one of the columns of expr
timeline
Timepoints for all cells, a vector
x.title
(optional) Label of x-axis
y.title
(optional) Label of y-axis
title
(optional) Plot title
Value
A ggplot object
lingxuez/SOUP documentation built on May 28, 2019, 3:38 p.m.
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Description Usage Arguments Value
Description
Plot gene expression along trajectory
Usage
1 2 3 | plotGeneTimeline(expr, marker.gene, timeline,
x.title = "SOUP trajectory", y.title = "Expression", title = "",
font.size = 10)
|
Arguments
expr |
The cell-by-gene expression matrix to be visualized |
marker.gene |
The gene to be visualized; must be one of the columns of |
timeline |
Timepoints for all cells, a vector |
x.title |
(optional) Label of x-axis |
y.title |
(optional) Label of y-axis |
title |
(optional) Plot title |
Value
A ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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