getLineageTime: Decide cell pseudotime
In lingxuez/SOUP: Semi-soft Clustering of Single Cell Data
Description
Usage
Arguments
Value
Description
Compute the pseudotime of each cell along each lineage.
Usage
1
getLineageTime(lineages, membership)
Arguments
lineages
A list of vectors, one per lineage,
each containing the ordered cluster labels along the lineage
membership
the n-by-K soft membership matrix
Value
An n-by-L pseudotime matrix for L lineages.
Each column contains the pseudotime of cells along one lineage, and NA if a cell does not belong to it.
Cells are assigned to different lineages, potentially with overlaps, according to their major clusters.
lingxuez/SOUP documentation built on May 28, 2019, 3:38 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Compute the pseudotime of each cell along each lineage.
Usage
1 | getLineageTime(lineages, membership)
|
Arguments
lineages |
A list of vectors, one per lineage, each containing the ordered cluster labels along the lineage |
membership |
the n-by-K soft membership matrix |
Value
An n-by-L pseudotime matrix for L lineages. Each column contains the pseudotime of cells along one lineage, and NA if a cell does not belong to it. Cells are assigned to different lineages, potentially with overlaps, according to their major clusters.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.