Files in linnykos/multiomicCCA

Tilted CCA

R/cca.R R/common_decomposition.R R/common_snn.R R/compute_synchrony.R R/consensus_pca.R R/data_management.R R/differential_expression.R R/fine_tuning.R R/generate_data.R R/linalg.R R/metacell.R R/plot.R R/plot_alignment.R R/plot_cell_enrichment.R R/plot_clisi.R R/plot_decomposition.R R/postprocess_cell_enrichment.R R/postprocess_depvalue.R R/postprocess_distinct_variable_selection.R R/postprocess_graph_alignment.R R/postprocess_modality_alignment.R R/seurat_helpers.R R/snn.R R/svd.R R/tiltedCCA.R R/tiltedCCA_common_score.R R/utils.R R/variable_selection.R README.md man/compute_snns.Rd man/compute_synchrony.Rd man/consensus_pca.Rd man/construct_celltype_subsample.Rd man/create_SeuratDim.Rd man/create_multiSVD.Rd man/differential_expression.Rd man/dot-cca.Rd man/dot-compute_cca_aggregate_matrix.Rd man/dot-compute_distinct_score.Rd man/dot-compute_prob_mat.Rd man/dot-compute_unnormalized_scores.Rd man/dot-generate_adjaceny_mat.Rd man/dot-project_vec2vec.Rd man/dot-tiltedCCA_common_score.Rd man/fine_tuning.Rd man/form_metacells.Rd man/generate_random_orthogonal.Rd man/generate_sbm_orthogonal.Rd man/plot_alignment.Rd man/plot_cell_enrichment.Rd man/plot_clisi.Rd man/plot_clisi_legend.Rd man/plot_heatmat.Rd man/plot_scores.Rd man/plot_scores_heatmap.dcca.Rd man/plot_scores_heatmap.list.Rd man/plot_summary.Rd man/postprocess_cell_enrichment.Rd man/postprocess_cell_enrichment.default.Rd man/postprocess_cell_enrichment.multiSVD.Rd man/postprocess_depvalue.Rd man/postprocess_marker_variables.Rd man/postprocess_modality_alignment.Rd man/rotate_seurat_embeddings.Rd man/tiltedCCA.Rd man/tiltedCCA_decomposition.Rd tests/assets/generate_test_data.R tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test_cca.R tests/testthat/test_common_decomposition.R tests/testthat/test_common_snn.R tests/testthat/test_compute_cca_aggregate_matrix.R tests/testthat/test_compute_distinct_score.R tests/testthat/test_compute_synchrony.R tests/testthat/test_compute_unnormalized_scores.R tests/testthat/test_consensus_pca.R tests/testthat/test_convert_common_score_to_mat.R tests/testthat/test_data_management.R tests/testthat/test_evaluate_radian.R tests/testthat/test_fine_tuning.R tests/testthat/test_linalg.R tests/testthat/test_metacell.R tests/testthat/test_postprocess_cell_enrichment.R tests/testthat/test_postprocess_distinct_variable_selection.R tests/testthat/test_postprocess_graph_alignment.R tests/testthat/test_search_tilt_perc.R tests/testthat/test_seurat_helper.R tests/testthat/test_snn.R tests/testthat/test_svd.R tests/testthat/test_tiltedCCA.R tests/testthat/test_tiltedCCA_common_score.R tests/testthat/test_tiltedCCA_decomposition.R tests/testthat/test_utils.R tests/testthat/test_variable_selection.R vignettes/bm.Rmd vignettes/embryo.Rmd vignettes/simulation.Rmd vignettes/tiltedCCA.Rmd