test.equalgenetree: testing if gene trees are identical
In lliu1871/phybase: Basic functions for phylogenetic analysis
test.equalgenetree R Documentation
testing if gene trees are identical
Description
The function is the likelihood ratio test for the concatenation assumption that all gene trees have the same topology.
Usage
test.equalgenetree(path_raxml, inputfolder, nbootstrap)
Arguments
path_raxml
the full path of the raxml binary
inputfolder
the folder that contains all gene data. Each gene is a separate file
nbootstrap
The number of bootstrap replicates
Author(s)
Liang Liu lliu@uga.edu
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| test.equalgenetree | R Documentation |
testing if gene trees are identical
Description
The function is the likelihood ratio test for the concatenation assumption that all gene trees have the same topology.
Usage
test.equalgenetree(path_raxml, inputfolder, nbootstrap)
Arguments
path_raxml |
the full path of the raxml binary |
inputfolder |
the folder that contains all gene data. Each gene is a separate file |
nbootstrap |
The number of bootstrap replicates |
Author(s)
Liang Liu lliu@uga.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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