test.hybrid: testing if there are two species trees
In lliu1871/phybase: Basic functions for phylogenetic analysis
test.hybrid R Documentation
testing if there are two species trees
Description
The test is based on the proportion of gene trees supporting the alternative species tree.
Usage
test.hybrid(path_mpest, genetreefile, tree1, tree2, nbootstrap=100)
Arguments
path_mpest
the full path of the mpest binary
genetreefile
the input gene tree file
tree1
the null species tree
tree2
the alternative species tree
nbootstrap
the number of bootstrap replicates
Author(s)
Liang Liu lliu@uga.edu
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| test.hybrid | R Documentation |
testing if there are two species trees
Description
The test is based on the proportion of gene trees supporting the alternative species tree.
Usage
test.hybrid(path_mpest, genetreefile, tree1, tree2, nbootstrap=100)
Arguments
path_mpest |
the full path of the mpest binary |
genetreefile |
the input gene tree file |
tree1 |
the null species tree |
tree2 |
the alternative species tree |
nbootstrap |
the number of bootstrap replicates |
Author(s)
Liang Liu lliu@uga.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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