tree.subtree: Subtree
In lliu1871/phybase: Basic functions for phylogenetic analysis
tree.subtree R Documentation
Subtree
Description
The function returns the subtree under the node inode
Usage
tree.subtree(inode, name, nodematrix)
Arguments
inode
the root node of the subtree
name
the species names
nodematrix
the tree node matrix
Value
The function returns the tree string of the subtree.
Author(s)
Liang Liu lliu@harvard.edu
See Also
del.node
Examples
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
tree.subtree(7,spname,nodematrix)
lliu1871/phybase documentation built on April 21, 2024, 3:16 a.m.
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| tree.subtree | R Documentation |
Subtree
Description
The function returns the subtree under the node inode
Usage
tree.subtree(inode, name, nodematrix)
Arguments
inode |
the root node of the subtree |
name |
the species names |
nodematrix |
the tree node matrix |
Value
The function returns the tree string of the subtree.
Author(s)
Liang Liu lliu@harvard.edu
See Also
del.node
Examples
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
spname<-read.tree.nodes(treestr)$names
tree.subtree(7,spname,nodematrix)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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