gene: Statistics about genes

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Calculates some statistics of the genes, like the biggest pathway, the gene in more pathways, h-index and entropy or information content for the genes per pathway and pathways for genes and they percentage of the maximum.

Usage

gene(object, gene)

## S4 method for signature 'GeneSetCollection,character'
gene(object, gene)

## S4 method for signature 'GeneSetCollection,missing'
gene(object, gene)

Arguments

object	A GeneSetCollection object
gene	A character of the gene to analyze. If missing it will analyze all genes

Value

If a single gene is provided invisible a list of statistics (the statistics will be printed on the screen), otherwise the data.frame of statistics.

Methods (by class)

• object = GeneSetCollection,gene = character: Calculates statistics for a single gene

• object = GeneSetCollection,gene = missing: Calculates statistics for all genes

Author(s)

Llu<c3><ad>s Revilla

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.