modify: Modify a relationship

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Given a GeneSetCollection adds or remove a relationship between a gene and a pathway.

Usage

modify(object, gene, pathway)

## S4 method for signature 'GeneSetCollection,character,character'
modify(object,
  gene = NULL, pathway = NULL)

Arguments

object	A GeneSetCollection
gene	A vector of character with genes.
pathway	A vector of character with pathways.

Details

It accepts one gene and one pathway, several genes and one pathway and several pathways and one gene, but not several pathways and several genes.

Value

A GeneSetCollection with those relationships flipped.

Methods (by class)

• object = GeneSetCollection,gene = character,pathway = character: Add or remove relationships between genes and gene sets

See Also

drop To just remove a gene or a pathways add To just add a relationship.

Examples

modify(Info, "Gene2", "156580")
modify(Info, c("Gene2", "Gene3"), "156580")
modify(Info, "Gene2", c("156580", "211859"))

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.