estimate: Estimate a GeneSetCollection

Description Usage Arguments Value Examples

View source: R/estimate.R

Description

Given information about a GeneSetCollection it estimates the range of the different parameters. If the parameter should be a matrix, it only outputs the maximum and the lowest value it could reach.

Usage

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Arguments

nGenes

Numeric value with the number of genes

nPathways

Numeric value with the number of pathways

genesPerPathway

Numeric vector with the number of genes per pathway

pathwaysPerGene

Numeric vector with the number of pathways per gene

sizeGenes

Numeric matrix with the size of pathways in genes see sizeGenes

sizePathways

Numeric matrix with the size of genes in pathways see sizePathways

sizePerGenes

A numeric vector with the amount of pathways of different size per genes see sizesPerGene

sizePerPathways

A numeric vector with the amount of genes of different size per pathways see sizesPerPathway

Value

A data.frame with the max and minimum value for each estimate. NA is returned if it cannot be estimated.

Examples

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llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.