sizeGenes: Number of genes in pathways of genes

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Calculates the number of pathways per gene in pathways.

Usage

sizeGenes(object, gene)

## S4 method for signature 'GeneSetCollection,missing'
sizeGenes(object)

## S4 method for signature 'GeneSetCollection,character'
sizeGenes(object, gene)

Arguments

object	A GeneSetCollection
gene	A vector of character with genes.

Value

A matrix or a list of vectors if only some genes are requested

Methods (by class)

• object = GeneSetCollection,gene = missing: Number of genes per pathway in all genes

• object = GeneSetCollection,gene = character: Number of genes per pathway in all genes

See Also

sizePathways To equivalent for pathways

Examples

sizeGenes(Info)
sizeGenes(Info, "2")
sizeGenes(Info, c("2", "3"))

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.