sizePathways: Number of pathways in genes of pathways

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Calculates the number of pathways per gene in pathways.

Usage

sizePathways(object, pathway)

## S4 method for signature 'GeneSetCollection,missing'
sizePathways(object)

## S4 method for signature 'GeneSetCollection,character'
sizePathways(object, pathway)

Arguments

object	A GeneSetCollection
pathway	A vector of character with pathways.

Value

A matrix or a list of vectors if only some pathways are requested

Methods (by class)

• object = GeneSetCollection,pathway = missing: Number of pathways per gene in all pathways

• object = GeneSetCollection,pathway = character: Number of pathways per gene in all pathways

See Also

sizeGenes The equivalent for genes

Examples

sizePathways(Info)
sizePathways(Info, "1430728")
sizePathways(Info, c("1430728", "156580"))

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.