Man pages for lsaravia/EcoNetwork
Ecological network analyses including multiplex networks
| add_interlayer_links | Generate Node aligned Interlayer Edges for a Multilayer... |
| BuildSupraAdjacencyMatrixFromExtendedEdgelist | Build supra-adjacency matrix from edge lists |
| calc_centrality | Compute Centrality for a Weighted/Unweighted Network |
| calc_incoherence | Calculate the incoherence index of a food web |
| calc_interaction_intensity | Calculates the interaction intensity of a food web using the... |
| calc_interaction_intensity2 | Calculates the interaction intensity of a food web using... |
| calc_modularity | Calculation of Modularity for a List of igraph Objects |
| calc_modularity_swness_zscore | Calculation of Modularity and Small-world-ness z-scores |
| calc_QSS | Calc the Quasi Sign Stability measure for antagonistic... |
| calc_QSS_extinction_dif | Calculates the QSS difference between the full network and... |
| calc_QSS_extinction_dif_grp | Calculates the QSS difference between the full network and... |
| calc_QSS_extinctions_seq | Calculates the QSS for an extinction sequence |
| calc_quantitative_connectance | Calculates the quantitative connectance, and the effective... |
| calc_svd_entropy | Singular Value Decomposition (SVD) Entropy and Rank... |
| calc_svd_entropy_importance | Singular Value Decomposition (SVD) Analysis of Networks |
| calc_swness_zscore | Calculation Small-world-ness z-scores |
| calc_topological_indices | Calculate topological indices for ecological networks. The... |
| calc_topological_roles | Calc topological roles among network communities/modules |
| calc_weighted_topological_indices | Function to calculate weighted network indices |
| classify_topological_roles | Classify and plot topological roles |
| convert_to_intra_format | Convert a List of igraph Objects to Intralayer Edge Format |
| convert_to_supra_adjacency | Convert Multilayer Network to Supra-Adjacency Matrix (SAM) |
| curve_ball | Curbe ball algorithm to generate random networks with given... |
| fromGLVadjToIgraph | From Generalized Lotka Volterra adjacency matrix to igraph... |
| fromIgraphToMgraph | From multiple igraph objects to 'mgraph' |
| generate_er_basal | Generate directed Erdos-Renyi random networks with at least 1... |
| generate_niche | Generate Niche Model Food Web(s) |
| generate_shuffled_seq | Generate a Sequence of Shuffled Networks and Track Metric... |
| generate_shuffled_seq_tol | Generate a Sequence of Shuffled Networks and Track... |
| metadata | Metadata for 'netData' |
| netData | Compilation of Ecological Networks (food webs) in igraph... |
| plot_troph_level | Plot ecological network organized by trophic level, with node... |
| plot_troph_level_ggplot | Plot an Ecological Network Organized by Trophic Level |
| readMultiplex | Read ecological multiplex networks using different files for... |
| readNetwork | Read ecological networks in CSV or tab separated file format... |
| run_infomap | Interface R and igraph with Infomap (external binary) |
| run_infomap_multi | Run Infomap on Multilayer Networks with Intralayer Links |
| shuffle_network_deg | Degree-Preserving Network Shuffling via Edge Swaps |
| shuffle_network_ws | Random Network Rewiring Without Preserving Degree... |
| toGLVadjMat | From multiple interaction object 'mgraph'to GLV adjacency... |
| write_multilayer_network | Write a Multilayer Network to a File in Infomap-Compatible... |
