Man pages for lsaravia/EcoNetwork
Ecological network analyses including multiplex networks

add_interlayer_linksGenerate Node aligned Interlayer Edges for a Multilayer...
BuildSupraAdjacencyMatrixFromExtendedEdgelistBuild supra-adjacency matrix from edge lists
calc_centralityCompute Centrality for a Weighted/Unweighted Network
calc_incoherenceCalculate the incoherence index of a food web
calc_interaction_intensityCalculates the interaction intensity of a food web using the...
calc_interaction_intensity2Calculates the interaction intensity of a food web using...
calc_modularityCalculation of Modularity for a List of igraph Objects
calc_modularity_swness_zscoreCalculation of Modularity and Small-world-ness z-scores
calc_QSSCalc the Quasi Sign Stability measure for antagonistic...
calc_QSS_extinction_difCalculates the QSS difference between the full network and...
calc_QSS_extinction_dif_grpCalculates the QSS difference between the full network and...
calc_QSS_extinctions_seqCalculates the QSS for an extinction sequence
calc_quantitative_connectanceCalculates the quantitative connectance, and the effective...
calc_svd_entropySingular Value Decomposition (SVD) Entropy and Rank...
calc_svd_entropy_importanceSingular Value Decomposition (SVD) Analysis of Networks
calc_swness_zscoreCalculation Small-world-ness z-scores
calc_topological_indicesCalculate topological indices for ecological networks. The...
calc_topological_rolesCalc topological roles among network communities/modules
calc_weighted_topological_indicesFunction to calculate weighted network indices
classify_topological_rolesClassify and plot topological roles
convert_to_intra_formatConvert a List of igraph Objects to Intralayer Edge Format
convert_to_supra_adjacencyConvert Multilayer Network to Supra-Adjacency Matrix (SAM)
curve_ballCurbe ball algorithm to generate random networks with given...
fromGLVadjToIgraphFrom Generalized Lotka Volterra adjacency matrix to igraph...
fromIgraphToMgraphFrom multiple igraph objects to 'mgraph'
generate_er_basalGenerate directed Erdos-Renyi random networks with at least 1...
generate_nicheGenerate Niche Model Food Web(s)
generate_shuffled_seqGenerate a Sequence of Shuffled Networks and Track Metric...
generate_shuffled_seq_tolGenerate a Sequence of Shuffled Networks and Track...
metadataMetadata for 'netData'
netDataCompilation of Ecological Networks (food webs) in igraph...
plot_troph_levelPlot ecological network organized by trophic level, with node...
plot_troph_level_ggplotPlot an Ecological Network Organized by Trophic Level
readMultiplexRead ecological multiplex networks using different files for...
readNetworkRead ecological networks in CSV or tab separated file format...
run_infomapInterface R and igraph with Infomap (external binary)
run_infomap_multiRun Infomap on Multilayer Networks with Intralayer Links
shuffle_network_degDegree-Preserving Network Shuffling via Edge Swaps
shuffle_network_wsRandom Network Rewiring Without Preserving Degree...
toGLVadjMatFrom multiple interaction object 'mgraph'to GLV adjacency...
write_multilayer_networkWrite a Multilayer Network to a File in Infomap-Compatible...
lsaravia/EcoNetwork documentation built on April 5, 2025, 1:51 p.m.