calc_modularity: Calculation of Modularity for a list of igraph objects
In lsaravia/EcoNetwork: Ecological network analysis includind multiplex networks
Description
Usage
Arguments
Value
Examples
View source: R/calcTopologicalIndices.r
Description
The function calculates modularity of the list of networks in the nullDist parameter.
Modularity is calculated using the igraph::cluster_spinglass()
if the parameter weights is NULL the atribute "weigths" is used, or if it has the name of an network attribute,
that is used as a weigth to build the modules, when this parameter is NA then no weigth is used.
Only works for one component networks.
Usage
1
calc_modularity(ig, ncores = 0)
Arguments
ig
list of igraph objects to calculate modularity
ncores
number of cores used to compute in parallel, if 0 sequential processing is used.
Value
a data.frame with the field Modularity
Examples
1
2
3
4
5
## Not run:
nullg <- generateERbasal(netData[[1]],10)
calc_modularity(nullg)
## End(Not run)
lsaravia/EcoNetwork documentation built on Oct. 26, 2020, 11:09 p.m.
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Description Usage Arguments Value Examples
View source: R/calcTopologicalIndices.r
Description
The function calculates modularity of the list of networks in the nullDist parameter.
Modularity is calculated using the igraph::cluster_spinglass()
if the parameter weights is NULL the atribute "weigths" is used, or if it has the name of an network attribute,
that is used as a weigth to build the modules, when this parameter is NA then no weigth is used.
Only works for one component networks.
Usage
1 | calc_modularity(ig, ncores = 0)
|
Arguments
ig |
list of igraph objects to calculate modularity |
ncores |
number of cores used to compute in parallel, if 0 sequential processing is used. |
Value
a data.frame with the field Modularity
Examples
1 2 3 4 5 | ## Not run:
nullg <- generateERbasal(netData[[1]],10)
calc_modularity(nullg)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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