Description Usage Arguments Value Examples

View source: R/calcTopologicalIndices.r

The function calculates modularity of the list of networks in the nullDist parameter.
Modularity is calculated using the `igraph::cluster_spinglass()`

Only works for one component networks.

1 | ```
calc_modularity(ig, ncores = 0, weights = NA)
``` |

`ig` |
list of igraph objects to calculate modularity |

`ncores` |
number of cores used to compute in parallel, if 0 sequential processing is used. |

`weights` |
The weights of the edges. Either a numeric vector or NULL or NA. If it is null and the input graph has a ‘weight’ edge attribute then that will be used. If NULL and no such attribute is present then the edges will have equal weights. Set this to NA if the graph was a ‘weight’ edge attribute, but you don't want to use it for community detection. |

a data.frame with the field Modularity

1 2 3 4 5 | ```
## Not run:
nullg <- generateERbasal(netData[[1]],10)
calc_modularity(nullg)
## End(Not run)
``` |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.