View source: R/calcTopologicalIndices.r

calc_modularity | R Documentation |

The function calculates modularity of the list of networks in the nullDist parameter.
Modularity is calculated using the `igraph::cluster_spinglass()`

Only works for one component networks.

calc_modularity(ig, ncores = 0, weights = NA)

`ig` |
list of igraph objects to calculate modularity |

`ncores` |
number of cores used to compute in parallel, if 0 sequential processing is used. |

`weights` |
The weights of the edges. Either a numeric vector or NULL or NA. If it is null and the input graph has a ‘weight’ edge attribute then that will be used. If NULL and no such attribute is present then the edges will have equal weights. Set this to NA if the graph was a ‘weight’ edge attribute, but you don't want to use it for community detection. |

a data.frame with the field Modularity

## Not run: nullg <- generateERbasal(netData[[1]],10) calc_modularity(nullg) ## End(Not run)

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