generate_shuffled_seq: Generate a Sequence of Shuffled Networks and Track Metric...
In lsaravia/EcoNetwork: Ecological network analyses including multiplex networks

generate_shuffled_seq

R Documentation

Generate a Sequence of Shuffled Networks and Track Metric Evolution

Description

This function generates a sequence of shuffled networks from an original graph, applying incremental shuffling steps while tracking modularity, SVD rank and entropy .

Usage

generate_shuffled_seq(
  original_graph,
  max_delta = 10,
  delta = 10,
  directed = TRUE,
  weighted = TRUE,
  shuffle_func = shuffle_network_ws,
  modularity_func = cluster_infomap
)

Arguments

`original_graph`	An igraph object representing the original network.
`max_delta`	Integer. Number of total shuffling steps to perform.
`delta`	Integer. Number of swaps per shuffling step.
`directed`	Logical. Whether the network is directed (default: TRUE).
`weighted`	Logical. Whether the network is weighted (default: TRUE).
`shuffle_func`	Function. A network shuffling function (default: `shuffle_network_ws`).
`modularity_func`	Function. A modularity calculation function (default: `cluster_infomap`).

Value

A list with:

`Networks`	A list of igraph objects representing the shuffled networks at each step.
`Metrics`	A tibble containing the step number, SVD entropy, SVD Rank, and modularity score.