plot_troph_level: Plot ecological network organized by trophic level, with node...
In lsaravia/EcoNetwork: Ecological network analyses including multiplex networks

plot_troph_level

R Documentation

Plot ecological network organized by trophic level, with node size determined by the node degree, and modules.

Description

Plot ecological network organized by trophic level, with node size determined by the node degree, and modules.

Usage

plot_troph_level(
  g,
  vertexLabel = FALSE,
  vertexSizeFactor = 5,
  vertexSizeMin = 5,
  tk = FALSE,
  modules = FALSE,
  lMat = NULL,
  weights = NA,
  community_obj = NULL,
  bpal = NULL,
  maxTL = NULL,
  ...
)

Arguments

`vertexLabel`	logical plot vertex labels
`vertexSizeFactor`	numeric factor to determine the size of the label with degree
`vertexSizeMin`	numeric determine the minimum size of the label
`tk`	TRUE generate an interactive plot using tkplot and returns a matrix with coordinates from `igraph::tkplot.getcoords()`
`modules`	if TRUE plot modules in the x axis, obtained with the cluster spinglass algorithm
`lMat`	Matrix of postions for the nodes
`weights`	The weights of the edges for the `igraph::cluster_spinglass()` community detection, either a numeric vector, NULL, or NA. if NULL and the network has a 'weight' attribute then that will be used, if NA then the 'weight' attributte is not considered.
`community_obj`	Insteado of calculating modules/communities with cluster spinglass take a community object
`bpal`	if NULL it uses the "RdYlGn" RColorBrewer palette, else must be a vector of colors of length 11.
`maxTL`	maximum trophic level to draw y-axis
`...`	Addittional parameters to the plot function
`ig`	igraph object