plot_troph_level: Plot ecological network organized by trophic level, with node...

In lsaravia/EcoNetwork: Ecological network analyses including multiplex networks

Plot ecological network organized by trophic level, with node size determined by the node degree, and modules.

Description

Plot ecological network organized by trophic level, with node size determined by the node degree, and modules.

Usage

plot_troph_level(
  g,
  vertexLabel = FALSE,
  vertexSizeFactor = 5,
  vertexSizeMin = 5,
  tk = FALSE,
  modules = FALSE,
  lMat = NULL,
  weights = NA,
  community_obj = NULL,
  bpal = NULL,
  maxTL = NULL,
  ...
)

Arguments

vertexLabel	logical plot vertex labels
vertexSizeFactor	numeric factor to determine the size of the label with degree
vertexSizeMin	numeric determine the minimum size of the label
tk	TRUE generate an interactive plot using tkplot and returns a matrix with coordinates from igraph::tkplot.getcoords()
modules	if TRUE plot modules in the x axis, obtained with the cluster spinglass algorithm
lMat	Matrix of postions for the nodes
weights	The weights of the edges for the igraph::cluster_spinglass() community detection, either a numeric vector, NULL, or NA. if NULL and the network has a 'weight' attribute then that will be used, if NA then the 'weight' attributte is not considered.
community_obj	Insteado of calculating modules/communities with cluster spinglass take a community object
bpal	if NULL it uses the "RdYlGn" RColorBrewer palette, else must be a vector of colors of length 11.
maxTL	maximum trophic level to draw y-axis
...	Addittional parameters to the plot function
ig	igraph object

Value

returns a plot and if tk==TRUE returns a layout matrix

Examples

plot_troph_level(netData[[1]])

lsaravia/EcoNetwork documentation built on April 5, 2025, 1:51 p.m.