Files in lusystemsbio/NetAct
NetAct -- a computational platform to construct core transcription factor regulatory networks using gene activity
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NetAct.Rproj
R/DEG_Analysis.R
R/RcppExports.R
R/TF_Activity.R
R/TF_Filter.R
R/TF_Selection.R
R/Utilities.R
R/data.R
README.md
data/hDB.rdata
data/mDB.rdata
man/Activity_heatmap.Rd
man/DEG_Analysis_Micro.Rd
man/GSEA_permut_R.Rd
man/GSEA_permut_R_revised.Rd
man/GSEA_proc_R.Rd
man/GSEA_proc_RC.Rd
man/GSEA_score.Rd
man/Hill.Rd
man/MicroDegs.Rd
man/Preprocess_counts.Rd
man/RNAseqDegs_DESeq.Rd
man/RNAseqDegs_limma.Rd
man/Reselect_TFs.Rd
man/TF_Activity.Rd
man/TF_Filter.Rd
man/TF_Filter_addgene.Rd
man/TF_GSEA.Rd
man/TF_Selection.Rd
man/allNet.Rd
man/applyDPI.Rd
man/cal_activity.Rd
man/calculateMI.Rd
man/filterDB.Rd
man/getAdjacencyMat.Rd
man/hDB.Rd
man/mDB.Rd
man/plot_network.Rd
man/rem_data.Rd
man/row_norm.Rd
man/toCPM.Rd
src/GSEA_permute.cpp
src/GSEA_test.cpp
src/Makevars
src/RcppExports.cpp
src/cppGSEA.cpp
vignettes/.DS_Store
vignettes/NetAct_1.0.6.pdf
vignettes/Tutorial.Rmd
vignettes/Tutorial.html
vignettes/gsearslts_tutorial.RDS
vignettes/tutorial_network.png
