calculateMI: Calculate mutual information
In lusystemsbio/NetAct: NetAct -- a computational platform to construct core transcription factor regulatory networks using gene activity
calculateMI R Documentation
Calculate mutual information
Description
Mutual information between all pairs based on entropy package.
Usage
calculateMI(actMat = actMat, nbins = 16, method = "2d")
Arguments
actMat
numeric matrix.
nbins
integer (optional). Number of bins Default 16
method
MI calculation method:
"2d": 2D discretization with entropy (default)
"1d": 1D discretization with infotheo
Value
numeric matrix (0-1). Matrix containing mutual information values
lusystemsbio/NetAct documentation built on Sept. 7, 2024, 8:34 p.m.
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| calculateMI | R Documentation |
Calculate mutual information
Description
Mutual information between all pairs based on entropy package.
Usage
calculateMI(actMat = actMat, nbins = 16, method = "2d")
Arguments
actMat |
numeric matrix. |
nbins |
integer (optional). Number of bins Default 16 |
method |
MI calculation method: "2d": 2D discretization with entropy (default) "1d": 1D discretization with infotheo |
Value
numeric matrix (0-1). Matrix containing mutual information values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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