Preprocess_counts: RNA-seq data pre processing
In lusystemsbio/NetAct: NetAct -- a computational platform to construct core transcription factor regulatory networks using gene activity
Preprocess_counts R Documentation
RNA-seq data pre processing
Description
NetAct uses edgeR to load the count data and the group information for experimental conditions,
It also coverts gene symbols and remove duplicates.
Usage
Preprocess_counts(counts, groups, mouse = FALSE)
Arguments
counts
raw count matrix
groups
group information for experimental conditions
mouse
use mouse genome or not (default: FALSE)
Value
x$counts: processed count matrix
lusystemsbio/NetAct documentation built on Sept. 7, 2024, 8:34 p.m.
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| Preprocess_counts | R Documentation |
RNA-seq data pre processing
Description
NetAct uses edgeR to load the count data and the group information for experimental conditions, It also coverts gene symbols and remove duplicates.
Usage
Preprocess_counts(counts, groups, mouse = FALSE)
Arguments
counts |
raw count matrix |
groups |
group information for experimental conditions |
mouse |
use mouse genome or not (default: FALSE) |
Value
x$counts: processed count matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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