Reselect_TFs: Reselecting TFs using gene set enrichement analysis (GSEA)...

In lusystemsbio/NetAct: NetAct -- a computational platform to construct core transcription factor regulatory networks using gene activity

Reselecting TFs using gene set enrichement analysis (GSEA) using an adjusted set of parameters (work together with TF_Selection)

Description

Reselecting TFs using gene set enrichement analysis (GSEA) using an adjusted set of parameters (work together with TF_Selection)

Usage

Reselect_TFs(GSEArslt, qval = 0.05, combine_TFs = TRUE, ntop = NULL)

Arguments

GSEArslt	GSEA results from TF_Selection
qval	q-value cutoff (default: 0.05)
combine_TFs	whether combine selected TFs from multiple comparisons or not (default: TRUE)
ntop	the number of top genes (selection by the top genes) (default: NULL, no selection by the top genes)

Value

tfs: a vector of selected TFs

lusystemsbio/NetAct documentation built on Sept. 7, 2024, 8:34 p.m.