Calls FindMarkers with extra features.
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ident.use |
Fetched via FetchData to define the groups being tested. Should obey |
test.use |
Passed into FindMarkers unless it is "binomial_batch", in which case it uses approximate p-values based on a binomial glmm with a random effect for batch (1|orig.ident). All other parameters are passed into FindMarkers unless test.use=="binomial_batch", in which case I attempt to match the behavior of FindMarkers. Output contains an extra column for q-values from p.adjust(..., method="fdr"). |
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