expected_doublet_counts: Given a named vector x with counts of various cell types,...
In maehrlab/thymusatlastools: Tools for analysis of single-cell transcriptomic data
Description
Given a named vector x with counts of various cell types, returns expected doublet quantities for each possible pairing.
Usage
1
expected_doublet_counts(x, rate = 0.05)
Details
Make sure you only feed this one replicate at a time! You can't get doublets across replicates.
Assumes a doublet rate of 5
Output is a named numeric vector of expected cell counts.
For names, every combination of names(x) should be present once in the output.
Order doesn't matter, so labels get alphabetized and concatenated with '_'.
Within-cluster doublets are included.
E.g. you get BLD_END and BLD_BLD but not END_BLD.
maehrlab/thymusatlastools documentation built on May 28, 2019, 2:32 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Given a named vector x with counts of various cell types, returns expected doublet quantities for each possible pairing.
Usage
1 | expected_doublet_counts(x, rate = 0.05)
|
Details
Make sure you only feed this one replicate at a time! You can't get doublets across replicates. Assumes a doublet rate of 5
Output is a named numeric vector of expected cell counts. For names, every combination of names(x) should be present once in the output. Order doesn't matter, so labels get alphabetized and concatenated with '_'. Within-cluster doublets are included. E.g. you get BLD_END and BLD_BLD but not END_BLD.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.