API for markgene/yamatCN
Yet Another Methylation Array Toolkit Copy Number Analysis
| Global functions | |
|---|---|
| .CNV_load | Source code |
| .batch_grid | Source code |
| .check_args_pipe | Source code |
| .check_args_preprocess | Source code |
| .combine | Source code |
| .conumee_segment_grid | Source code |
| .gender | Source code |
| .plot_chromosomes_single_sample | Source code |
| .plot_genome_single_sample | Source code |
| .plot_prep | Source code |
| .plot_single_sample_prep | Source code |
| .query_indices | Source code |
| .query_sample_names | Source code |
| .reference_indices | Source code |
| .reference_sample_names | Source code |
| .save_pipe | Source code |
| .to_DNAcopy_sample_ids | Source code |
| .to_absolute | Source code |
| .to_minfi_sample_name | Source code |
| .write_conumee_result | Source code |
| CNV.create_anno.yamat | Man page Source code |
| CNV.create_anno2 | Man page |
| ConumeePipe | Man page |
| ConumeePipe-class | Man page |
| CwobPipe | Man page |
| CwobPipe-class | Man page |
| MethylCNVPipe | Man page |
| MethylCNVPipe-class | Man page |
| Pipe | Man page |
| Pipe-class | Man page |
| cal_log2_ratio | Man page Source code |
| cal_log2_ratio.lm | Source code |
| cal_log2_ratio.mean | Source code |
| cal_log2_ratio.median | Source code |
| cnView | Source code |
| cnView_buildMain | Source code |
| conumee_analysis | Man page Source code |
| conumee_backbone | Man page |
| conumee_pipe | Man page Source code |
| create_dnacopy_cna | Man page Source code |
| cwob_pipe | Man page Source code |
| detail_regions | Man page Source code |
| dnacopy_analysis | Man page Source code |
| dnacopy_analysis.conumee | Man page Source code |
| dnacopy_analysis.default | Man page Source code |
| dnacopy_analysis.yamat | Man page Source code |
| get_influential_loci | Man page |
| methylcnv_pipe | Man page Source code |
| preprocess | Man page Source code |
| report_pipe | Man page |
| report_pipe,ConumeePipe-method | Man page |
| report_pipe,CwobPipe-method | Man page |
| save_pipe | Man page |
| save_pipe,ConumeePipe-method | Man page |
| save_pipe,CwobPipe-method | Man page |
| save_pipe,MethylCNVPipe-method | Man page |
| summarize_dnacopy_segments | Man page Source code |
| tune_conumee_pipe | Man page Source code |
| write_segments | Man page |
| write_segments,ConumeePipe-method | Man page |
