conumee_analysis: Main Conumee CNV analysis

In markgene/yamatCN: Yet Another Methylation Array Toolkit Copy Number Analysis

Description

Main Conumee CNV analysis

Usage

conumee_analysis(query, ref, anno, intercept = TRUE, seed = 1, ...)

Arguments

query	A CNV.data-class object of query sample (single sample).
ref	A CNV.data-class object of reference set.
anno	A CNV.anno-class object. Use CNV.create_anno or CNV.create_anno2 to create.
intercept	A logical scalar setting the intercept argument of CNV.fit. Should intercept be considered? Defaults to TRUE.
seed	An integer scalar to set the seed. Default to 1.
...	Any arguments passed to CNV.segment.

Value

An object of CNV.analysis-class.

markgene/yamatCN documentation built on Dec. 7, 2019, 4:36 a.m.