dnacopy_analysis.conumee: Run DNAcopy analysis: Conumee's settings.

In markgene/yamatCN: Yet Another Methylation Array Toolkit Copy Number Analysis

Description

Use Conumee's settings of segment. Notice: Conumee uses the bins of probes as markers rather than probes themselves.

Usage

dnacopy_analysis.conumee(x, lrr, seed = 1, verbose = TRUE)

Arguments

x	A minfi object such as RGChannelSet-class or MethylSet-class or GenomicMethylSet-class or GenomicRatioSet-class.
lrr	A matrix of log2 transformed ratio of query and reference copy number (sum of methylation and unmethylation signals).
seed	An integer scalar to set the seed. Default to 1.
verbose	A logical scalar. Default to TRUE.

Value

A DNAcopy object.

markgene/yamatCN documentation built on Dec. 7, 2019, 4:36 a.m.