dnacopy_analysis.default: Run DNAcopy analysis: DNAcopy's default settings.
In markgene/yamatCN: Yet Another Methylation Array Toolkit Copy Number Analysis
Description
Usage
Arguments
Value
Description
Use the default settings of segment.
Usage
1
dnacopy_analysis.default(x, lrr, seed = 1, verbose = TRUE)
Arguments
x
A minfi object such as
RGChannelSet-class or
MethylSet-class or
GenomicMethylSet-class or
GenomicRatioSet-class.
lrr
A matrix of log2 transformed ratio of query and reference copy
number (sum of methylation and unmethylation signals).
seed
An integer scalar to set the seed. Default to 1.
verbose
A logical scalar. Default to TRUE.
Value
A DNAcopy object.
markgene/yamatCN documentation built on Dec. 7, 2019, 4:36 a.m.
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Description Usage Arguments Value
Description
Use the default settings of segment.
Usage
1 | dnacopy_analysis.default(x, lrr, seed = 1, verbose = TRUE)
|
Arguments
x |
A |
lrr |
A matrix of log2 transformed ratio of query and reference copy number (sum of methylation and unmethylation signals). |
seed |
An integer scalar to set the seed. Default to 1. |
verbose |
A logical scalar. Default to TRUE. |
Value
A DNAcopy object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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