cal_log2_ratio: Calculate log2 ratio of observed and expected values of...
In markgene/yamatCN: Yet Another Methylation Array Toolkit Copy Number Analysis
Description
Usage
Arguments
Value
Note
Description
Calculate log2 ratio of observed and expected values of intensities at each
probe.
Usage
1
cal_log2_ratio(query, reference, method = c("mean", "median", "lm"))
Arguments
query
A matrix of query sample intensity.
reference
A matrix of reference sample intensity.
method
A character scalar. Default to "mean".
Value
A matrix of log2 ratio of query samples.
Note
If an intensity is less than 1, it is set to 1.
markgene/yamatCN documentation built on Dec. 7, 2019, 4:36 a.m.
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Description Usage Arguments Value Note
Description
Calculate log2 ratio of observed and expected values of intensities at each probe.
Usage
1 | cal_log2_ratio(query, reference, method = c("mean", "median", "lm"))
|
Arguments
query |
A matrix of query sample intensity. |
reference |
A matrix of reference sample intensity. |
method |
A character scalar. Default to "mean". |
Value
A matrix of log2 ratio of query samples.
Note
If an intensity is less than 1, it is set to 1.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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