API for markgene/yamatClassifier
Yet Another Methylation Array Toolkit: Classifier
| Global functions | |
|---|---|
| .custom_pal | Source code |
| compute_relative_log_expression | Man page Source code |
| cor_mtest | Man page Source code |
| correlogram | Man page Source code |
| create_trainer | Man page Source code |
| cross_validate_model5 | Man page Source code |
| density_plot_row_sd | Man page Source code |
| diagnose_tsne.coord | Man page |
| diagnose_tsne.cor | Man page |
| explore_batch_effect | Man page Source code |
| explore_batch_effect_beta_value | Man page Source code |
| explore_batch_effect_beta_value_pca_compute | Man page Source code |
| explore_batch_effect_beta_value_rle | Man page Source code |
| explore_batch_effect_meth | Man page Source code |
| explore_batch_effect_meth_pca_compute | Man page Source code |
| explore_batch_effect_meth_rle | Man page Source code |
| explore_batch_effect_unmeth | Man page Source code |
| explore_batch_effect_unmeth_pca_compute | Man page Source code |
| explore_batch_effect_unmeth_rle | Man page Source code |
| find_pc_number.capper | Man page |
| find_pc_number.var_frac | Man page |
| find_pc_number.yamat | Man page |
| get_and_filter_probes | Man page Source code |
| get_batch_effect_explore_dir | Man page Source code |
| get_batch_matrix | Man page Source code |
| get_beta_value | Man page Source code |
| get_beta_value_adjusted | Man page Source code |
| get_beta_value_adjusted_rda | Man page Source code |
| get_main_pca_plot | Man page Source code |
| get_meth | Man page Source code |
| get_meth_from_preprocessed_files | Man page Source code |
| get_preprocessed_dir | Man page Source code |
| get_probes | Man page Source code |
| get_probes_from_scratch | Man page Source code |
| get_probes_rda | Man page Source code |
| get_targets | Man page Source code |
| get_trainer_rda | Man page Source code |
| get_unmeth | Man page Source code |
| get_unmeth_from_preprocessed_files | Man page Source code |
| get_x_density_plot | Man page Source code |
| get_y_density_plot | Man page Source code |
| most_variable | Man page Source code |
| multiplot_tsne | Man page Source code |
| pca | Man page Source code |
| pca123 | Man page Source code |
| plot_pca_result | Man page Source code |
| plot_relative_log_expression | Man page Source code |
| plot_tsne | Man page Source code |
| prepare_plot_data | Man page Source code |
| preprocess_dkfz | Man page Source code |
| project_pc | Man page Source code |
| run_fitsne | Man page Source code |
| run_rtsne | Man page Source code |
| select_features_boruta | Man page Source code |
| select_features_boruta2 | Man page Source code |
| select_features_ranger | Man page Source code |
| shuffle_matrix | Man page Source code |
| shuffle_matrix.column | Source code |
| train_batch_effect_model | Man page Source code |
| train_calibration_model_ridge | Man page Source code |
| train_model1 | Man page Source code |
| train_model1_inner_fold | Man page Source code |
| train_model1_outer_fold | Man page Source code |
| train_model2 | Man page Source code |
| train_model2_inner_fold | Man page Source code |
| train_model2_outer_fold | Man page Source code |
| train_model3 | Man page Source code |
| train_model3_inner_fold | Man page Source code |
| train_model3_outer_fold | Man page Source code |
| train_model4 | Man page Source code |
| train_model4_inner_fold | Man page Source code |
| train_model4_outer_fold | Man page Source code |
| train_model5_inner_fold | Man page Source code |
| train_model5_outer_fold | Man page Source code |
| train_preprocess_pipe | Man page Source code |
| tsne | Man page Source code |
