R_affinity_multi: Calculate the TRAP affinity for each position along one or...
In matthuska/tRap: A biophysical model for transcription factor binding affinities
Description
Usage
Arguments
Value
Description
Calculate the TRAP affinity for each position along one or more sequences
Usage
1
2
R_affinity_multi(pwm, motiflength, sequence, seqlength, Rmax, lambda,
bothstrands)
Arguments
pwm
The position weight matrix
motiflength
The length of the PWM
sequence
a list of one or more genomic sequences
seqlength
the lengths of the sequences
Rmax
rmax
lambda
lambda
bothstrands
should the affinity be calcuated on both strands (DNA) or just one (RNA)
Value
a list where each element is a numeric vector containing the
scores along the length of a single sequence.
matthuska/tRap documentation built on May 21, 2019, 1:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Calculate the TRAP affinity for each position along one or more sequences
Usage
1 2 | R_affinity_multi(pwm, motiflength, sequence, seqlength, Rmax, lambda,
bothstrands)
|
Arguments
pwm |
The position weight matrix |
motiflength |
The length of the PWM |
sequence |
a list of one or more genomic sequences |
seqlength |
the lengths of the sequences |
Rmax |
rmax |
lambda |
lambda |
bothstrands |
should the affinity be calcuated on both strands (DNA) or just one (RNA) |
Value
a list where each element is a numeric vector containing the scores along the length of a single sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.