get.affinity.cutoff: determine significance threshold for tRap affinities
In matthuska/tRap: A biophysical model for transcription factor binding affinities
Description
Usage
Arguments
Value
Description
Get affinity cutoff values that corresponds to a given P-value
Usage
1
get.affinity.cutoff(matrix.name, pwm, pvalue.cutoff)
Arguments
pwm
the position weight matrix
matrix.name
name of the transfac matrix
pvalue.cutoff
significance threshold for the TFBS hits
Value
affinity cutoff that corresponds to the given P-value
matthuska/tRap documentation built on May 21, 2019, 1:23 p.m.
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Description Usage Arguments Value
Description
Get affinity cutoff values that corresponds to a given P-value
Usage
1 | get.affinity.cutoff(matrix.name, pwm, pvalue.cutoff)
|
Arguments
pwm |
the position weight matrix |
matrix.name |
name of the transfac matrix |
pvalue.cutoff |
significance threshold for the TFBS hits |
Value
affinity cutoff that corresponds to the given P-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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