R_affinity_sum_multi: Calculate the TRAP affinity for one or more sequences (one...
In matthuska/tRap: A biophysical model for transcription factor binding affinities
Description
Usage
Arguments
Value
Description
Calculate the TRAP affinity for one or more sequences (one score per sequence)
Usage
1
2
R_affinity_sum_multi(pwm, motiflength, sequence, seqlength, Rmax, lambda,
bothstrands)
Arguments
pwm
The position weight matrix
motiflength
The length of the PWM
sequence
a list of one or more genomic sequences
seqlength
the lengths of the sequences
Rmax
rmax
lambda
lambda
bothstrands
should the affinity be calcuated on both strands (DNA) or just one (RNA)
Value
a numeric vector of the scores for each sequence
matthuska/tRap documentation built on May 21, 2019, 1:23 p.m.
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Description Usage Arguments Value
Description
Calculate the TRAP affinity for one or more sequences (one score per sequence)
Usage
1 2 | R_affinity_sum_multi(pwm, motiflength, sequence, seqlength, Rmax, lambda,
bothstrands)
|
Arguments
pwm |
The position weight matrix |
motiflength |
The length of the PWM |
sequence |
a list of one or more genomic sequences |
seqlength |
the lengths of the sequences |
Rmax |
rmax |
lambda |
lambda |
bothstrands |
should the affinity be calcuated on both strands (DNA) or just one (RNA) |
Value
a numeric vector of the scores for each sequence
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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