local.paffinity: Calculate local p-values
In matthuska/tRap: A biophysical model for transcription factor binding affinities
Description
Usage
Arguments
Details
Value
Description
Compute local affinity p-values
Usage
1
2
3
local.paffinity(affnt, pwm, seq, Rmax = NULL, lambda = 0.7,
pseudo.count = 1, gc.content = 0.5, window.size = NULL,
window.offset = 1)
Arguments
affnt
pwm
seq
Rmax
lambda
pseudo.count
gc.content
window.size
window.offset
Details
Use an empirical distribution to calculate a p-value for a given affinity
value using a set of sequences that are passed in.
Value
p-value
matthuska/tRap documentation built on May 21, 2019, 1:23 p.m.
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Description Usage Arguments Details Value
Description
Compute local affinity p-values
Usage
1 2 3 | local.paffinity(affnt, pwm, seq, Rmax = NULL, lambda = 0.7,
pseudo.count = 1, gc.content = 0.5, window.size = NULL,
window.offset = 1)
|
Arguments
affnt |
|
pwm |
|
seq |
|
Rmax |
|
lambda |
|
pseudo.count |
|
gc.content |
|
window.size |
|
window.offset |
Details
Use an empirical distribution to calculate a p-value for a given affinity value using a set of sequences that are passed in.
Value
p-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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