find_recomb_spots: A function to find recombination breakpoint regions for a...
In mccoy-lab/rhapsodi: R haploid sperm/oocyte data imputation
View source: R/find_recomb_spots.R
find_recomb_spots R Documentation
A function to find recombination breakpoint regions for a single gamete
Description
This function finds recombination breakpoint regions for a single gamete by finding
where adjacent non-NA haplotypes switch. Most likely large regions will be returned
rather than 2bp windows because the sparsity of the original data constrains how
many NAs will remain after filling and therefore we can only say that the true
exchange point occurs somewhere between these two non-matching haplotypes
Usage
find_recomb_spots(input_gamete_data, x, identities, genomic_positions)
Arguments
input_gamete_data
(tibble) SNPs correspond to the rows and gametes correspond to the columns
x
which gamete number to search
identities
gamete identities vector
genomic_positions
Genomic SNP positions
Value
recomb_spots tibble of the recombination spots for gamete x
mccoy-lab/rhapsodi documentation built on July 27, 2022, 3:56 a.m.
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View source: R/find_recomb_spots.R
| find_recomb_spots | R Documentation |
A function to find recombination breakpoint regions for a single gamete
Description
This function finds recombination breakpoint regions for a single gamete by finding where adjacent non-NA haplotypes switch. Most likely large regions will be returned rather than 2bp windows because the sparsity of the original data constrains how many NAs will remain after filling and therefore we can only say that the true exchange point occurs somewhere between these two non-matching haplotypes
Usage
find_recomb_spots(input_gamete_data, x, identities, genomic_positions)
Arguments
input_gamete_data |
(tibble) SNPs correspond to the rows and gametes correspond to the columns |
x |
which gamete number to search |
identities |
gamete identities vector |
genomic_positions |
Genomic SNP positions |
Value
recomb_spots tibble of the recombination spots for gamete x
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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